Reptile

Application data
Created by	Yang X, Dorman K, Aluru S
Biological application domain(s)	Genomics
Principal bioinformatics method(s)	Sequencing quality control
Technology	Illumina
Created at	Iowa State University
Maintained?	Yes
Programming language(s)	C++
Licence	GPL Boost

Summary: A new algorithm for short read error correction that harvests information from k-spectrum and read decomposition

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Description

Reptile is a software developed in C++ for correcting sequencing errors in short reads from next-gen sequencing platforms. It has several favorable properties: 1) Memory Efficient, 2) High Speed, 3) Can handle reads containing non-acgt characters and reads with non-equal length, 4) Makes simple use of quality score information.

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