Rnnotator
|
Application data |
|
| Biological application domain(s) | Sequence assembly (de-novo assembly), Transcriptome assembly |
|---|---|
| Maintained? | Maybe |
| Licence | Commercial, Freeware |
| Contact: | DEGilbert@lbl.gov |
Summary: Automated software pipeline that generates transcript models by de novo assembly of RNA-Seq data without the need for a reference genome
"Error: no local variable "counter" was set." is not a number.
Description
Rnnotator provides a pipeline for transcript assembly which deduplicates reads and filters for errors and then runs multiple velvet (or velvet oases based on this [post]) iterations, merges them and finally identifies strands and corrects errors.
This was shown by the authors to improve the assembly quality. In addition, the filtering and deduplication will likely reduce the memory footprint for the velvet runs
Links
none specified
References
To add a reference for Rnnotator, enter the PubMed ID in the field below and click 'Add'.
Search for "Rnnotator" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
