SVMerge
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Application data |
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| Biological application domain(s) | Structural variation |
|---|---|
| Technology | Illumina |
| Created at | The Wellcome Trust Sanger Institute |
| Maintained? | Yes |
| Input format(s) | FASTQ, FASTA |
| Output format(s) | BED |
| Programming language(s) | Perl |
Summary: Pipeline for the detection of structural variants by integrating calls from multiple structural variant callers.
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Description
SVMerge detects structural variants (SVs) by integrating calls from several existing SV callers, which are then validated and the breakpoints refined using local de novo assembly. SVMerge is modular and extensible allowing new callers to be incorporated as they become available.
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