Scaffolder
|
Application data |
|
| Created by | Michael Barton |
|---|---|
| Principal bioinformatics method(s) | Scaffolding |
| Created at | University of Akron |
| Maintained? | Yes |
| Input format(s) | YAML, FASTA |
| Programming language(s) | Ruby |
| Licence | MIT |
| Operating system(s) | Linux, Mac OS X |
Summary: Edit your genome sequence using a simple human readable syntax. Manage contig positions and add inserts all in a plain text file.
"Error: no local variable "counter" was set." is not a number.
Description
This software allows a genome build to be defined in terms of the constituent sequences using a relatively simple syntax. This syntax further allows unknown regions to be specified and additional sequence to be used to fill known gaps in the scaffold. Defining the genome construction in a file makes the scaffolding process reproducible and easier to edit compared with large FASTA nucleotide sequences
Scaffolder is easy-to-use genome scaffolding software which promotes reproducibility and continuous development in a genome project.
Links
- Scaffolder Homepage [ edit link ]
- Scaffolder Mailing list [ edit link ]
- Scaffolder Source code [ edit link ]
References
none specified
To add a reference for Scaffolder, enter the PubMed ID in the field below and click 'Add'.
Search for "Scaffolder" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
