SeqBuster
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Application data |
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| Created by | L Pantano |
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| Biological application domain(s) | Transcriptomics, Regulatory RNA |
| Principal bioinformatics method(s) | Read mapping, Annotation |
| Technology | Illumina, 454 |
| Created at | Centre of Genomic Regulation |
| Maintained? | Yes |
| Input format(s) | FASTA, Tab-delimited |
| Output format(s) | Tab-delimited |
| Software features | Annotation and detection of miRNAs and other small RNAs |
| Programming language(s) | Java, R |
| Licence | Commercial, Freeware |
| Operating system(s) | Mac OS X, Linux |
Summary: SeqBuster, a web-based bioinformatic tool offering a custom analysis of deep sequencing data at different levels, with special emphasis on the analysis of miRNA variants or isomiRs and the discovering of new small RNAs.
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Description
SeqBuster, a web-based bioinformatic tool offering a custom analysis of deep sequencing data at different levels, with special emphasis on the analysis of miRNA variants or isomiRs and the discovering of new small RNAs.
Features:
- SeqBuster includes a stand-alone version that permits the annotation against any custom database installed in the local machine independently of the web server.
- Second, the R environment, in which the different analysis packages have been developed, permits the incorporation and/or modification of different types of analysis, which may be focused not only on small non-coding RNAs but also on any type of sequence generated in large-scale sequencing strategies.
- This provides a continuous evolving platform, where future analysis packages may be easily added to the repository. Third, SeqBuster is highly versatile offering a wide range of options both in the pre-analysis for annotation purposes and in the different module analysis for data manipulation.
Links
References
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