SeqTrim

Application data
Principal bioinformatics method(s)	Sequence trimming
Created at	Universidad de Málaga
Maintained?	Maybe

Summary: A pipeline for preprocessing sequences.

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SeqTrim is a pipeline designed to high-throughput preprocessing of any sequence read. It is flexible even if default parameters are accurate for most purposes. It identifies the sequence insert by removing low quality sequences, cloning vector, poly-A or poly-T tails, adaptors, and any contaminant sequence or unwanted feature. Several input and output formats (with and without quality values) are available, which enables its inclusion in already or newly defined sequence processing workflows.

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References

1. . 2008. Innovations in Hybrid Intelligent Systems
2. . 2010. BMC Bioinformatics

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