SomaticCall

Application data
Biological application domain(s)	Genetic variation
Created at	Broad Institute
Maintained?	Maybe
Input format(s)	BAM

Summary: Finds single-base differences (substitutions) between sequence data from tumor and matched normal samples.

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SomaticCall takes as input a BAM file for each sample (tumor and matched normal), and produces as output a list of differences (somatic mutations).

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• SomaticCall Source code [ edit link ]

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