Changes

Jump to: navigation, search

Gk arrays

475 bytes added, 13:14, 7 October 2011
no edit summary
{{Bioinformatics application
|sw summary=Gk-arrays are a data structure to index the k-mers in a collection of reads (short sequences provided by Next Generation Sequencing machines). It is distributed as a a C++ library to build and query Gk-arrays. This code is freely available under a CeCILL-C license.
|bio domain=Genomics, transcriptomics, Assembly, Metagenomics, ...|bio method=Assembly, Error correction, Mapping, |bio tech=All, Illumina, 454, Sanger, ...|created by=Philippe N, Salson M, Lecroq T, Léonard M, Commes T, Rivals E.|created at=LIRMM, UMR 5506, CNRS and Université de Montpellier 2, CC 477, 161 rue Ada, 34095 Montpellier, France. rivals@lirmm.fr.LITIS EA 4108, Université de Rouen, 1 rue Thomas Becket, 76821 Mont-Saint-Aignan Cedex, FranceLIFL, UMR 8022 CNRS and Université Lille 1 and INRIA Lille-Nord-Europe, Bât. M3 - UFR IEEA, 59655 Villeneuve d'Ascq Cedex, France
|maintained=Yes
|input format=FASTA, Fastq, Multi-FastA,
|output format=none
|sw feature=programming library
|language=C++,
|licence=CeCILL-C license
|os=Linux, Linux 64, Mac OS X, any
14
edits

Navigation menu