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|sw summary=Nexalign is a program to align millions of short reads from next-generation sequencing data sets to reference genomes
|bio method=Mapping,
|bio tech=454, ABI SOLiD, Illumina, |created by=Timo Lassmann, |created at=RIKEN Yokohama Institute,
|maintained=No
|input format=FASTA, |output format=BED, GFF, TXT, |language=C++, R,
|licence=GPL,
|os=UNIX,
