SpliceGrapher

Application data
Biological application domain(s)	Alternative splicing
Principal bioinformatics method(s)	Visualisation
Technology	Any
Maintained?	Maybe
Input format(s)	GFF, GTF

Summary: SpliceGrapher is a package for creating splice graphs from RNA-Seq data, guided by gene models and EST data (when available).

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Description

Features Use your favorite read mapping and spliced alignment tools. Accurate spliced-alignment filtering using SVM classifiers that recognize splice junction sequence features. Generate statistics of alternative splicing. Visualisation of splice graphs, splice junctions, and read depth Use our pipeline or construct your own custom pipeline out of SpliceGrapher modules.

Links

• SpliceGrapher Homepage [ edit link ]

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References

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