Syzygy
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Application data |
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| Created by | Manuel A. Rivas and Mark J. Daly |
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| Biological application domain(s) | SNP detection, Indel detection |
| Created at | Broad Institute |
| Maintained? | Yes |
| Input format(s) | BAM |
| Output format(s) | Various |
| Programming language(s) | Python, R |
Summary: Software to identify variants from pooled sequencing data
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Description
Syzygy is a targeted sequencing post processing analysis tool that allows:
Rare variant SNP detection; Allele frequency estimation; Single-marker association test; Group-wise marker test association; Experimental QC summary (%dbSNP, Ts/Tv, Ns/S); Power to detect variant.
Documentation seems to indicate that Syzygy works for either indexed/barcoded or non-indexed (where individual-of-origin is not known for reads) pooled samples.
Links
References
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