T-lex

Application data
Biological application domain(s)	Mobile genetic elements
Created at	Stanford University
Maintained?	Maybe
Input format(s)	FASTQ
Programming language(s)	Perl

Summary: Here, we present a computational pipeline (T-lex) that uses NGS data to detect the presence/absence of annotated Transposable Element (TE) copies. T-lex can use data from a large number of strains and returns estimates of population frequencies of individual TE insertions in a reasonable time.

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References

1. . 2010. Nucleic Acids Research

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