Ta-si prediction
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Application data |
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| Created by | Stocks MB, Mapleson D, Moxon S |
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| Biological application domain(s) | Workflows |
| Principal bioinformatics method(s) | phase pattern prediction |
| Technology | Illumina, 454 |
| Created at | University of East Anglia |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ |
| Output format(s) | csv, Various image file formats |
| Programming language(s) | Java |
| Licence | Custom Licence |
| Operating system(s) | Linux 64, Windows, Mac OS X |
Summary: ta-siRNA (trans-acting short interfering RNA): prediction of phased ta-siRNAs in plant sRNA datasets.
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Description
Part of the UEA sRNA Workbench freely available at:
http://srna-workbench.cmp.uea.ac.uk
ta-siRNA (trans-acting short interfering RNA): prediction of phased ta-siRNAs in plant sRNA datasets. Users are presented with the coordinates of the TAS loci and the phased sRNAs. After prediction is complete users can click on a TAS locus to have it visualised as it appears on the genome
Links
References
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To add a reference for Ta-si prediction, enter the PubMed ID in the field below and click 'Add'.
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