VARiD
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Application data |
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| Created by | Dalca AV, Dzamba M, Rumble S, Levy S, Brudno M |
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| Biological application domain(s) | Genomics, SNP detection, Indel detection, SNP detection, Indel detection |
| Principal bioinformatics method(s) | Statistical calculation |
| Technology | ABI SOLiD, Illumina, 454, Sanger |
| Created at | University of Toronto |
| Maintained? | Yes |
| Input format(s) | SAM |
| Software features | SNP/indel discovery in any format, even combining Colorspace with Letterspace |
| Programming language(s) | C |
| Licence | GPLv3 |
Summary: VARiD is a variation detection framework for both color-space and letter-space platforms
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Description
VARiD is a Hidden Markov Model for SNP and indel identification with AB-SOLiD color-space as well as regular letter-space reads. VARiD combines both types of data in a single framework which allows for accurate predictions. VARiD was developed at the University of Toronto Computational Biology Lab.
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