VIP
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Application data |
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| Created by | De Schrijver J |
|---|---|
| Biological application domain(s) | Genomics, SNP |
| Principal bioinformatics method(s) | Mapping, SNP annotation, SNP detection |
| Technology | 454 |
| Created at | Biobix - Ghent University |
| Maintained? | Maybe |
| Input format(s) | Fasta |
| Output format(s) | Output to local database |
| Software features | Read mapping, SNP calling, coverage analysis, SNP annotation |
| Programming language(s) | Perl, MySQL |
| Licence | LGPL |
| Operating system(s) | Linux |
Summary: A complete package designed for next-generation diagnostics using 454 sequencing.
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The VIP (Variant Identification Pipeline) is designed for 454 based diagnostics. The package is modular and database-based and allows intelligent analysis of the data. The package allows standard analyses such as coverage analysis, SNP calling, SNP annotation etc. The database approach makes it possible to have a detailed look at certain regions, certain variants etc.
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