VariationHunter
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Application data |
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| Created by | Fereydoun Hormozdiari, Can Alkan |
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| Biological application domain(s) | Structural variation |
| Principal bioinformatics method(s) | Read mapping, Variant calling |
| Technology | Illumina |
| Created at | Simon Fraser University
University of Washington |
| Maintained? | Yes |
| Input format(s) | DIVET |
| Programming language(s) | C |
| Operating system(s) | UNIX |
Summary: Detection of structural rearrangements
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Description
VariationHunter is a combinatorial algorithms for SV detection using the paired-end, NGS methods. Our algorithm evaluates all potential mapping locations of each paired-end read and decides on the final mapping and the SVs they imply interdependently. The main criteria used for predicting SVs is based on Maximum Parsimony principle.
Links
- VariationHunter Source code [ edit link ]
- VariationHunter Related [ edit link ]
- VariationHunter Related [ edit link ]
- VariationHunter Related [ edit link ]
References
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