Vcflib

Application data
Created by	Erik Garrison
Biological application domain(s)	Genomics
Created at	Boston College
Maintained?	Yes
Input format(s)	VCF
Output format(s)	VCF
Programming language(s)	C++
Licence	MIT

Summary: API and command line utilities for the manipulation of VCF files.

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vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

• an API for parsing and operating on records of genomic variation as it can be described by the VCF format,
• and a collection of command-line utilities for executing complex manipulations on VCF files.

The API itself provides a quick and extremely permissive method to read and write VCF files. Extensions and applications of the library provided in the included utilities (*.cpp) comprise the vast bulk of the library's utility for most users.

Links

• Vcflib Source code [ edit link ]

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References

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