VisSR
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Application data |
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| Created by | Stocks MB, Mapleson D, Moxon S, Woolfenden H |
|---|---|
| Biological application domain(s) | Transcriptomics |
| Principal bioinformatics method(s) | Visualisation |
| Technology | Illumina, 454 |
| Created at | University of East Anglia |
| Maintained? | Yes |
| Input format(s) | Aligned Sequence Files, FASTA, FASTQ, GFF |
| Output format(s) | Various image file formats |
| Software features | Desktop sRNA Visualisation |
| Programming language(s) | Java |
| Interface type(s) | Desktop GUI |
| Resource type(s) | Desktop application |
| Licence | Custom Licence |
| Operating system(s) | Linux 64, Windows, Mac OS X |
Summary: VisSR (Visualisation of sRNAs): generate a visual representation of sRNAs and user-imported genomic features.
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Description
Part of the UEA sRNA Workbench freely available at:
http://srna-workbench.cmp.uea.ac.uk
generates a visual representation of sRNAs and user-imported genomic features either with information directly imported from other tools in the sRNA Workbench or through user input in the form of a direct visualisation of sRNA alignment or through standard GFF files
Links
- VisSR Homepage [ edit link ]
- VisSR Manual [ edit link ]
References
none specified
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