Difference between revisions of "PRICE"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=PRICE uses paired-read information to iteratively increase the size of existing contigs. | |sw summary=PRICE uses paired-read information to iteratively increase the size of existing contigs. | ||
| − | |bio method= | + | |bio method=Sequence assembly, |
| + | |created at=University of California at San Francisco, | ||
| + | |maintained=Yes | ||
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<!-- Describe the application in the space below --> | <!-- Describe the application in the space below --> | ||
| − | + | PRICE was designed to address the challenge of assembling viral genomes that comprise a small minority of the reads within ultra-deep, short-read, shotgun metagenomic datasets. PRICE has already enabled the discovery of several novel virus genomes from such complex datasets, and it is also being applied to the de novo assembly of large individual genomes. | |
Latest revision as of 04:29, 25 August 2015
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Application data |
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| Principal bioinformatics method(s) | Sequence assembly |
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| Created at | University of California at San Francisco |
| Maintained? | Yes |
| Programming language(s) | C++ |
Summary: PRICE uses paired-read information to iteratively increase the size of existing contigs.
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Description
PRICE was designed to address the challenge of assembling viral genomes that comprise a small minority of the reads within ultra-deep, short-read, shotgun metagenomic datasets. PRICE has already enabled the discovery of several novel virus genomes from such complex datasets, and it is also being applied to the de novo assembly of large individual genomes.
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References
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