Difference between revisions of "PASS"
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{{Bioinformatics application | {{Bioinformatics application | ||
| − | |sw summary=. | + | |sw summary=PASS performs fast gapped and ungapped alignments of short DNA sequences onto a reference DNA, typically a genomic sequence. It is designed to handle a huge amount of reads such as those generated by Solexa, SOLiD or 454 technologies. The algorithm is based on a data structure that holds in RAM the index of the genomic positions of seed" words (typically 11-12 bases) as well as an index of the precomputed scores of short words (typically 7-8 bases) aligned against each other. |
| + | |bio method=Sequence alignment | ||
| + | |language=C++ | ||
| + | |os=Linux, Windows, | ||
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| − | Link | + | |
| + | {{Links}} | ||
| + | {{References}} | ||
| + | {{Link box}} | ||
Latest revision as of 16:08, 19 December 2015
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Application data |
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| Principal bioinformatics method(s) | Sequence alignment |
|---|---|
| Maintained? | Maybe |
| Programming language(s) | C++ |
| Operating system(s) | Linux, Windows |
Summary: PASS performs fast gapped and ungapped alignments of short DNA sequences onto a reference DNA, typically a genomic sequence. It is designed to handle a huge amount of reads such as those generated by Solexa, SOLiD or 454 technologies. The algorithm is based on a data structure that holds in RAM the index of the genomic positions of seed" words (typically 11-12 bases) as well as an index of the precomputed scores of short words (typically 7-8 bases) aligned against each other.
"Error: no local variable "counter" was set." is not a number.
Links
References
To add a reference for PASS, enter the PubMed ID in the field below and click 'Add'.
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