Difference between revisions of "MrCaNaVaR"
m (Text replace - "Personal genomics" to "Personalised medicine") |
|||
| (3 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals. | |sw summary=mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals. | ||
| − | |bio domain=Genomics, | + | |bio domain=Genomics, Personalised medicine, Copy number estimation, |
|bio method=Read depth analysis | |bio method=Read depth analysis | ||
|bio tech=Illumina, | |bio tech=Illumina, | ||
| Line 10: | Line 10: | ||
|output format=BED (copy numbers) | |output format=BED (copy numbers) | ||
|language=C | |language=C | ||
| − | |licence= | + | |licence=Commercial, Freeware, |
| − | |os= | + | |os=POSIX, |
}} | }} | ||
Latest revision as of 20:04, 19 December 2015
|
Application data |
|
| Created by | Can Alkan |
|---|---|
| Biological application domain(s) | Genomics, Personalised medicine, Copy number estimation |
| Principal bioinformatics method(s) | Read depth analysis |
| Technology | Illumina |
| Created at | University of Washington |
| Maintained? | Yes |
| Input format(s) | SAM |
| Output format(s) | BED (copy numbers) |
| Programming language(s) | C |
| Licence | Commercial, Freeware |
| Operating system(s) | POSIX |
Summary: mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals.
"Error: no local variable "counter" was set." is not a number.
Links
References
none specified
To add a reference for MrCaNaVaR, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "MrCaNaVaR" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
