Difference between revisions of "NextGENe"
(CSV import) |
m (Text replace - "Targeted resequencing" to "Exome capture") |
||
(11 intermediate revisions by 6 users not shown) | |||
Line 1: | Line 1: | ||
{{Bioinformatics application | {{Bioinformatics application | ||
− | |sw summary=de novo and reference assembly of Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly. Requires Win or MacOS. | + | |sw summary=de novo and reference assembly of Roche/454, Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly which reduces sequencing errors. Requires Win or MacOS. |
+ | |bio domain=Sequence assembly (de novo assembly), Metagenomics, SNP detection, Indel detection, Exome capture, | ||
+ | |bio tech=Illumina, 454, ABI SOLiD | ||
+ | |created at=SoftGenetics LLC | ||
+ | |maintained=Yes | ||
+ | |input format=FASTQ, FASTA, Scarf, FNAQual, CSFASTA/CSQUAL (ABI SOLiD), | ||
+ | |sw feature=Unique condensation tool, Data Visualisation, very flexible | ||
+ | |language=C++, | ||
+ | |licence=Commercial | ||
+ | |os=Windows | ||
}} | }} | ||
Link: http://softgenetics.com/NextGENe.html Category: Integrated solutions | Link: http://softgenetics.com/NextGENe.html Category: Integrated solutions | ||
+ | {{Links}} | ||
+ | {{References}} | ||
+ | {{Link box}} |
Latest revision as of 20:47, 19 December 2015
Application data |
|
Biological application domain(s) | Sequence assembly (de novo assembly), Metagenomics, SNP detection, Indel detection, Exome capture |
---|---|
Technology | Illumina, 454, ABI SOLiD |
Created at | SoftGenetics LLC |
Maintained? | Yes |
Input format(s) | FASTQ, FASTA, Scarf, FNAQual, CSFASTA/CSQUAL (ABI SOLiD) |
Software features | Unique condensation tool, Data Visualisation, very flexible |
Programming language(s) | C++ |
Licence | Commercial |
Operating system(s) | Windows |
Summary: de novo and reference assembly of Roche/454, Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly which reduces sequencing errors. Requires Win or MacOS.
"Error: no local variable "counter" was set." is not a number.
Link: http://softgenetics.com/NextGENe.html Category: Integrated solutions
Links
none specified
References
none specified
To add a reference for NextGENe, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "NextGENe" in the SEQanswers forum / BioStar or:
Web Search | Wiki Sites | Scientific |
---|---|---|