Difference between revisions of "ERGO Genome Analysis and Discovery System"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=ERGO provides a systems-biology informatics toolkit centered on comparative genomics to capture, query and visualize sequenced genomes. Building upon the most comprehensive genomic database available anywhere integrated with the largest collection of microbial metabolic and non-metabolic pathways and using Igenbio's proprietary algorithms, ERGO assigns functions to genes, integrates genes into pathways, and identifies previously unknown or mischaracterized genes, cryptic pathways and gene products. | |sw summary=ERGO provides a systems-biology informatics toolkit centered on comparative genomics to capture, query and visualize sequenced genomes. Building upon the most comprehensive genomic database available anywhere integrated with the largest collection of microbial metabolic and non-metabolic pathways and using Igenbio's proprietary algorithms, ERGO assigns functions to genes, integrates genes into pathways, and identifies previously unknown or mischaracterized genes, cryptic pathways and gene products. | ||
| − | |bio domain= | + | |bio domain=SNP, Phylogenetics, Comparative genomics, Metagenomics, Transcriptomics, Functional genomics, Exome analysis, Metabolic pathways, Transcription factors and regulatory sites, Gene structure, Genome Wide Association Studies, |
| + | |bio method=SNP annotation, SNP detection, Sequence alignment, Pathway or network analysis, Gene expression analysis, Sequence annotation, Sequence functional annotation, Metabolic network modelling, | ||
|bio tech=Sanger, Illumina, 454, ABI SOLiD, Ion Torrent, | |bio tech=Sanger, Illumina, 454, ABI SOLiD, Ion Torrent, | ||
|created at=Integrated Genomics (Igenbio, Inc). | |created at=Integrated Genomics (Igenbio, Inc). | ||
Latest revision as of 10:30, 11 January 2016
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Application data |
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| Biological application domain(s) | SNP, Phylogenetics, Comparative genomics, Metagenomics, Transcriptomics, Functional genomics, Exome analysis, Metabolic pathways, Transcription factors and regulatory sites, Gene structure, Genome Wide Association Studies |
|---|---|
| Principal bioinformatics method(s) | SNP annotation, SNP detection, Sequence alignment, Pathway or network analysis, Gene expression analysis, Sequence annotation, Sequence functional annotation, Metabolic network modelling |
| Technology | Sanger, Illumina, 454, ABI SOLiD, Ion Torrent |
| Created at | Integrated Genomics (Igenbio, Inc). |
| Maintained? | Yes |
| Licence | Commercial |
| Operating system(s) | Web |
| Contact: | ross@integratedgenomics.com |
Summary: ERGO provides a systems-biology informatics toolkit centered on comparative genomics to capture, query and visualize sequenced genomes. Building upon the most comprehensive genomic database available anywhere integrated with the largest collection of microbial metabolic and non-metabolic pathways and using Igenbio's proprietary algorithms, ERGO assigns functions to genes, integrates genes into pathways, and identifies previously unknown or mischaracterized genes, cryptic pathways and gene products.
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