Difference between revisions of "QSeq"
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{{Bioinformatics application | {{Bioinformatics application | ||
| − | |sw summary=QSeq is DNASTAR's Next-Gen application for RNA-Seq,ChIP- | + | |sw summary=QSeq is DNASTAR's Next-Gen application for RNA-Seq, ChIP-seq, and miRNA alignment and analysis. |
| − | |bio domain=ChIP- | + | |bio domain=ChIP-seq, RNA-Seq, Regulatory RNA |
| − | |bio method= | + | |bio method=Sequence alignment, Visualisation, Peak calling, |
|bio tech=Roche NimbleGen, Illumina, 454, ABI SOLiD, Helicos, Sanger | |bio tech=Roche NimbleGen, Illumina, 454, ABI SOLiD, Helicos, Sanger | ||
|created at=http://www.dnastar.com | |created at=http://www.dnastar.com | ||
|maintained=Yes | |maintained=Yes | ||
|licence=Commercial, | |licence=Commercial, | ||
| − | |os=Windows 7 64-bit or Higher, Mac OS X 10.7, 10.8, or 10.9 with Parallels Desktop, | + | |os=Windows 7 64-bit or Higher, Mac OS X 10.7, 10.8, or 10.9 with Parallels Desktop, |
}} | }} | ||
== Description == | == Description == | ||
<!-- Describe the application in the space below --> | <!-- Describe the application in the space below --> | ||
| − | '''QSeq®''' is DNASTAR's next-gen application for sequence quantification processing, and supports [[SeqMan NGen]] assemblies of RNA-Seq, ChIP- | + | '''QSeq®''' is DNASTAR's next-gen application for sequence quantification processing, and supports [[SeqMan NGen]] assemblies of RNA-Seq, ChIP-seq, CNV, and miRNA data, integrating the analysis of gene expression and SNP interrogation. QSeq is fully integrated with [[ArrayStar]], enabling you to take advantage of its powerful visualization and analytical tools, including using Gene Ontology (GO) annotations for ontology comparisons and gene characterization. |
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Latest revision as of 10:31, 11 January 2016
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Application data |
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| Biological application domain(s) | ChIP-seq, RNA-Seq, Regulatory RNA |
|---|---|
| Principal bioinformatics method(s) | Sequence alignment, Visualisation, Peak calling |
| Technology | Roche NimbleGen, Illumina, 454, ABI SOLiD, Helicos, Sanger |
| Created at | http://www.dnastar.com |
| Maintained? | Yes |
| Licence | Commercial |
| Operating system(s) | Windows 7 64-bit or Higher, Mac OS X 10.7, 10.8, or 10.9 with Parallels Desktop |
Summary: QSeq is DNASTAR's Next-Gen application for RNA-Seq, ChIP-seq, and miRNA alignment and analysis.
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Description
QSeq® is DNASTAR's next-gen application for sequence quantification processing, and supports SeqMan NGen assemblies of RNA-Seq, ChIP-seq, CNV, and miRNA data, integrating the analysis of gene expression and SNP interrogation. QSeq is fully integrated with ArrayStar, enabling you to take advantage of its powerful visualization and analytical tools, including using Gene Ontology (GO) annotations for ontology comparisons and gene characterization.
Links
References
none specified
To add a reference for QSeq, enter the PubMed ID in the field below and click 'Add'.
Search for "QSeq" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
