Difference between revisions of "ANCHOR"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Post-processing tools for de novo assemblies | |sw summary=Post-processing tools for de novo assemblies | ||
| − | |bio method=Sequence assembly | + | |bio method=Sequence assembly, |
|bio tech=Illumina, | |bio tech=Illumina, | ||
|interface=Command line, | |interface=Command line, | ||
Revision as of 15:42, 1 November 2016
|
Application data |
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| Principal bioinformatics method(s) | Sequence assembly |
|---|---|
| Technology | Illumina |
| Created at | Canada's Michael Smith Genome Sciences Centre |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ |
| Output format(s) | FASTA, BAM |
| Programming language(s) | C++, Python |
| Interface type(s) | Command line |
| Resource type(s) | Command-line tool |
| Software libraries | SAMtools, BWA, blat |
| Licence | BCCA (academic use) |
| Operating system(s) | Linux |
| Contact: | rdocking@bcgsc.ca |
Summary: Post-processing tools for de novo assemblies
"Error: no local variable "counter" was set." is not a number.
Description
Anchor currently includes two main modules:
- Correction of erroneous single-nucleotide variants and small indels
- Scaffold-filling by local re-assembly
Links
References
none specified
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