ANCHOR
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Application data |
|
| Biological application domain(s) | De-novo assembly |
|---|---|
| Principal bioinformatics method(s) | Sequence assembly |
| Technology | Illumina |
| Created at | Canada's Michael Smith Genome Sciences Centre |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ |
| Output format(s) | FASTA, BAM |
| Programming language(s) | C++, Python |
| Interface type(s) | Command line |
| Resource type(s) | Command-line tool |
| Software libraries | SAMtools, BWA, blat |
| Licence | BCCA (academic use) |
| Operating system(s) | Linux |
| Contact: | rdocking@bcgsc.ca |
Summary: Post-processing tools for de novo assemblies
"Error: no local variable "counter" was set." is not a number.
Description
Anchor currently includes two main modules:
- Correction of erroneous single-nucleotide variants and small indels
- Scaffold-filling by local re-assembly
Links
References
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