Difference between revisions of "ANCHOR"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Post-processing tools for de novo assemblies | |sw summary=Post-processing tools for de novo assemblies | ||
| − | |bio method=Sequence assembly | + | |bio domain=De-novo assembly, |
| − | |bio tech=Illumina, | + | |bio method=Sequence assembly, |
| − | |created at=Canada's Michael Smith Genome Sciences Centre, | + | |bio tech=Illumina, |
| + | |interface=Command line, | ||
| + | |resource type=Command-line tool, | ||
| + | |created at=Canada's Michael Smith Genome Sciences Centre, | ||
|maintained=Yes | |maintained=Yes | ||
| − | |input format=FASTA, FASTQ, | + | |email address=rdocking@bcgsc.ca |
| − | |output format=FASTA, BAM, | + | |input format=FASTA, FASTQ, |
| − | |language=C++, Python, | + | |output format=FASTA, BAM, |
| + | |language=C++, Python, | ||
|library=SAMtools, BWA, blat | |library=SAMtools, BWA, blat | ||
| − | |licence=BCCA (academic use), | + | |licence=BCCA (academic use), |
| − | |os=Linux, | + | |os=Linux, |
}} | }} | ||
== Description == | == Description == | ||
Latest revision as of 18:02, 1 November 2016
|
Application data |
|
| Biological application domain(s) | De-novo assembly |
|---|---|
| Principal bioinformatics method(s) | Sequence assembly |
| Technology | Illumina |
| Created at | Canada's Michael Smith Genome Sciences Centre |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ |
| Output format(s) | FASTA, BAM |
| Programming language(s) | C++, Python |
| Interface type(s) | Command line |
| Resource type(s) | Command-line tool |
| Software libraries | SAMtools, BWA, blat |
| Licence | BCCA (academic use) |
| Operating system(s) | Linux |
| Contact: | rdocking@bcgsc.ca |
Summary: Post-processing tools for de novo assemblies
"Error: no local variable "counter" was set." is not a number.
Description
Anchor currently includes two main modules:
- Correction of erroneous single-nucleotide variants and small indels
- Scaffold-filling by local re-assembly
Links
References
none specified
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