Difference between revisions of "ANCHOR"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Post-processing tools for de novo assemblies | |sw summary=Post-processing tools for de novo assemblies | ||
− | |bio method= | + | |bio domain=De-novo assembly, |
− | |bio tech=Illumina, | + | |bio method=Sequence assembly, |
− | |created at=Canada's Michael Smith Genome Sciences Centre, | + | |bio tech=Illumina, |
+ | |interface=Command line, | ||
+ | |resource type=Command-line tool, | ||
+ | |created at=Canada's Michael Smith Genome Sciences Centre, | ||
|maintained=Yes | |maintained=Yes | ||
− | |input format=FASTA, FASTQ, | + | |email address=rdocking@bcgsc.ca |
− | |output format=FASTA, BAM, | + | |input format=FASTA, FASTQ, |
− | |language=C++, Python, | + | |output format=FASTA, BAM, |
+ | |language=C++, Python, | ||
|library=SAMtools, BWA, blat | |library=SAMtools, BWA, blat | ||
− | |licence=BCCA (academic use), | + | |licence=BCCA (academic use), |
− | |os=Linux, | + | |os=Linux, |
}} | }} | ||
== Description == | == Description == |
Latest revision as of 18:02, 1 November 2016
Application data |
|
Biological application domain(s) | De-novo assembly |
---|---|
Principal bioinformatics method(s) | Sequence assembly |
Technology | Illumina |
Created at | Canada's Michael Smith Genome Sciences Centre |
Maintained? | Yes |
Input format(s) | FASTA, FASTQ |
Output format(s) | FASTA, BAM |
Programming language(s) | C++, Python |
Interface type(s) | Command line |
Resource type(s) | Command-line tool |
Software libraries | SAMtools, BWA, blat |
Licence | BCCA (academic use) |
Operating system(s) | Linux |
Contact: | rdocking@bcgsc.ca |
Summary: Post-processing tools for de novo assemblies
"Error: no local variable "counter" was set." is not a number.
Description
Anchor currently includes two main modules:
- Correction of erroneous single-nucleotide variants and small indels
- Scaffold-filling by local re-assembly
Links
References
none specified
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