Difference between revisions of "TEQC"
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{{Bioinformatics application | {{Bioinformatics application | ||
| − | |sw summary=Quality assessment of target enrichment experiments | + | |sw summary=Quality assessment of target enrichment experiments. |
| − | |bio domain= | + | |bio domain=Exome capture, |
| − | |bio method=Sequencing | + | |bio method=Sequencing quality control, |
| + | |interface=Command line, | ||
| + | |resource type=Command-line tool, | ||
|language=R | |language=R | ||
}} | }} | ||
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<!-- Describe the application in the space below --> | <!-- Describe the application in the space below --> | ||
| − | + | Quality measures comprise specificity and sensitivity of the capture, enrichment, per-target read coverage and its relation to hybridization probe characteristics, coverage uniformity and reproducibility, and read duplicate analysis. Several diagnostic plots allow visual inspection of the data quality. | |
Latest revision as of 17:42, 4 November 2016
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Application data |
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| Biological application domain(s) | Exome capture |
|---|---|
| Principal bioinformatics method(s) | Sequencing quality control |
| Maintained? | Maybe |
| Programming language(s) | R |
| Interface type(s) | Command line |
| Resource type(s) | Command-line tool |
Summary: Quality assessment of target enrichment experiments.
"Error: no local variable "counter" was set." is not a number.
Description
Quality measures comprise specificity and sensitivity of the capture, enrichment, per-target read coverage and its relation to hybridization probe characteristics, coverage uniformity and reproducibility, and read duplicate analysis. Several diagnostic plots allow visual inspection of the data quality.
Links
References
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