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Hrm
{{Bioinformatics application
|sw summary=MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. Released as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools. Version 3.0 was developed |bio domain=Alignment|bio method=Alignments|created by Stefan =KurtzS, Adam PhillippyA, Arthur L DelcherAL, Michael SmootM, Martin ShumwayM, Corina Antonescu and Steven L C, Salzberg - most of whom are SL|created at =The Institute for Genomic Research in , Maryland|input format=FASTA, USA. |os=POSIX OS required.
}}
Link: http://mummer.sourceforge.net/ Category: Alignment
[PMID http://www.ncbi.nlm.nih.gov/pubmed/19389736] claims to be interface equivalent, and more memory efficient.
MUMmer is released as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.
