Difference between revisions of "MUMmer"
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{{Bioinformatics application | {{Bioinformatics application | ||
| − | |sw summary=MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. | + | |sw summary=MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. |
| + | |bio domain=Alignment | ||
| + | |bio method=Alignments | ||
| + | |created by=Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL | ||
| + | |created at=The Institute for Genomic Research, Maryland | ||
| + | |input format=FASTA, | ||
| + | |os=POSIX | ||
}} | }} | ||
Link: http://mummer.sourceforge.net/ Category: Alignment | Link: http://mummer.sourceforge.net/ Category: Alignment | ||
[PMID http://www.ncbi.nlm.nih.gov/pubmed/19389736] claims to be interface equivalent, and more memory efficient. | [PMID http://www.ncbi.nlm.nih.gov/pubmed/19389736] claims to be interface equivalent, and more memory efficient. | ||
| + | |||
| + | MUMmer is released as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools. | ||
Revision as of 16:23, 5 January 2010
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Application data |
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| Created by | Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL |
|---|---|
| Biological application domain(s) | Alignment |
| Principal bioinformatics method(s) | Alignments |
| Created at | The Institute for Genomic Research, Maryland |
| Maintained? | Maybe |
| Input format(s) | FASTA |
| Operating system(s) | POSIX |
Summary: MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence.
"Error: no local variable "counter" was set." is not a number.
Link: http://mummer.sourceforge.net/ Category: Alignment
[PMID http://www.ncbi.nlm.nih.gov/pubmed/19389736] claims to be interface equivalent, and more memory efficient.
MUMmer is released as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.
