Difference between revisions of "NextGENe"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=de novo and reference assembly of Roche/454, Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly which reduces sequencing errors. Requires Win or MacOS. | |sw summary=de novo and reference assembly of Roche/454, Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly which reduces sequencing errors. Requires Win or MacOS. | ||
| − | |bio domain=SNP/Indel Detection, De novo sequencing, targeted resequencing and transcriptome sequencing, Metagenomics, | + | |bio domain=SNP/Indel Detection, De novo sequencing, targeted resequencing and transcriptome sequencing, Metagenomics, |
| − | |bio tech=Illumina, | + | |bio tech=Illumina, 454, ABI SOLiD |
|created at=SoftGenetics LLC | |created at=SoftGenetics LLC | ||
|maintained=Yes | |maintained=Yes | ||
| − | |input format=FASTQ, FASTA, Scarf, | + | |input format=FASTQ, FASTA, Scarf, FNAQual, CSFASTA/CSQUAL (ABI SOLiD), |
|sw feature=Unique condensation tool, Data Visualisation, very flexible | |sw feature=Unique condensation tool, Data Visualisation, very flexible | ||
| − | |language=C++, | + | |language=C++, |
|licence=Commercial | |licence=Commercial | ||
|os=Windows | |os=Windows | ||
Revision as of 21:07, 13 October 2010
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Application data |
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| Biological application domain(s) | SNP/Indel Detection, De novo sequencing, targeted resequencing and transcriptome sequencing, Metagenomics |
|---|---|
| Technology | Illumina, 454, ABI SOLiD |
| Created at | SoftGenetics LLC |
| Maintained? | Yes |
| Input format(s) | FASTQ, FASTA, Scarf, FNAQual, CSFASTA/CSQUAL (ABI SOLiD) |
| Software features | Unique condensation tool, Data Visualisation, very flexible |
| Programming language(s) | C++ |
| Licence | Commercial |
| Operating system(s) | Windows |
Summary: de novo and reference assembly of Roche/454, Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly which reduces sequencing errors. Requires Win or MacOS.
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Link: http://softgenetics.com/NextGENe.html Category: Integrated solutions
Links
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References
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