Difference between revisions of "CopySeq"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=CopySeq analyzes the depth-of-coverage of whole genome resequencing data to predict CNVs and to infer quantitative locus copy-number genotypes. | |sw summary=CopySeq analyzes the depth-of-coverage of whole genome resequencing data to predict CNVs and to infer quantitative locus copy-number genotypes. | ||
| − | |bio domain=Structural variants, Copy number estimation, Genotyping, Personal genomics, | + | |bio domain=Structural variants, Copy number estimation, Genotyping, Personal genomics, |
| − | |bio tech=Illumina/Solexa, | + | |bio tech=Illumina/Solexa, |
| + | |created at=Weizmann Institute of Science, EMBL | ||
|maintained=Yes | |maintained=Yes | ||
| − | |input format=BAM, | + | |input format=BAM, |
| − | |output format= | + | |output format=Tab-delimited file |
|language=Java 1.6, R | |language=Java 1.6, R | ||
| − | |os=Mac OS X 10.5, Linux, | + | |os=Mac OS X 10.5, Linux, |
}} | }} | ||
== Description == | == Description == | ||
Revision as of 13:49, 13 April 2011
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Application data |
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| Biological application domain(s) | Structural variants, Copy number estimation, Genotyping, Personal genomics |
|---|---|
| Technology | Illumina/Solexa |
| Created at | Weizmann Institute of Science, EMBL |
| Maintained? | Yes |
| Input format(s) | BAM |
| Output format(s) | Tab-delimited file |
| Programming language(s) | Java 1.6, R |
| Operating system(s) | Mac OS X 10.5, Linux |
Summary: CopySeq analyzes the depth-of-coverage of whole genome resequencing data to predict CNVs and to infer quantitative locus copy-number genotypes.
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Description
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