Difference between revisions of "MrCaNaVaR"
| Line 1: | Line 1: | ||
{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals. | |sw summary=mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals. | ||
| − | |bio domain=Genomics, Personal genomics, | + | |bio domain=Genomics, Personal genomics, Copy number estimation, |
|bio method=Read depth analysis | |bio method=Read depth analysis | ||
| − | |bio tech= | + | |bio tech=Illumina, |
|created by=Can Alkan | |created by=Can Alkan | ||
|created at=University of Washington | |created at=University of Washington | ||
Revision as of 04:37, 20 May 2011
|
Application data |
|
| Created by | Can Alkan |
|---|---|
| Biological application domain(s) | Genomics, Personal genomics, Copy number estimation |
| Principal bioinformatics method(s) | Read depth analysis |
| Technology | Illumina |
| Created at | University of Washington |
| Maintained? | Yes |
| Input format(s) | SAM |
| Output format(s) | BED (copy numbers) |
| Programming language(s) | C |
| Licence | Free for academic |
| Operating system(s) | All POSIX (Linux/BSD/UNIX-like OSes) |
Summary: mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals.
"Error: no local variable "counter" was set." is not a number.
Links
References
none specified
To add a reference for MrCaNaVaR, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "MrCaNaVaR" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
