Difference between revisions of "MrCaNaVaR"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals. | |sw summary=mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals. | ||
− | |bio domain=Genomics, Personal genomics, Copy number estimation, | + | |bio domain=Genomics, Personal genomics, Copy number estimation, |
|bio method=Read depth analysis | |bio method=Read depth analysis | ||
|bio tech=Illumina, | |bio tech=Illumina, | ||
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|language=C | |language=C | ||
|licence=Free for academic | |licence=Free for academic | ||
− | |os= | + | |os=POSIX, |
}} | }} | ||
Revision as of 11:58, 5 September 2011
Application data |
|
Created by | Can Alkan |
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Biological application domain(s) | Genomics, Personal genomics, Copy number estimation |
Principal bioinformatics method(s) | Read depth analysis |
Technology | Illumina |
Created at | University of Washington |
Maintained? | Yes |
Input format(s) | SAM |
Output format(s) | BED (copy numbers) |
Programming language(s) | C |
Licence | Free for academic |
Operating system(s) | POSIX |
Summary: mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals.
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