Difference between revisions of "SeqSolve"
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{{Bioinformatics application | {{Bioinformatics application | ||
| − | |sw summary= | + | |sw summary=Simple analysis of Next Generation Sequencing data. |
| − | |bio domain=RNA-seq, ChIP-seq, Transcriptome sequencing, miRNA, ncRNAs | + | |bio domain=RNA-seq, ChIP-seq, Transcriptome sequencing, miRNA, ncRNAs, sRNA, Differential Gene Expression, Alternative Splicing analysis, New gene discovery, Differential Expression, Quality Control, |
|bio method=SAMtools, Cufflinks, IGV, MACS, Tibco Spotfire | |bio method=SAMtools, Cufflinks, IGV, MACS, Tibco Spotfire | ||
|bio tech=Illumina, ABI SOLiD, 454, Ion Torrent, Helicos, PacBio, any | |bio tech=Illumina, ABI SOLiD, 454, Ion Torrent, Helicos, PacBio, any | ||
| Line 8: | Line 8: | ||
|maintained=Yes | |maintained=Yes | ||
|input format=SAM, BAM, BED, GTF, GFF, TXT | |input format=SAM, BAM, BED, GTF, GFF, TXT | ||
| − | |output format=JPG, PPT, PDF, BED, XLS, TXT | + | |output format=JPG, PPT, PDF, BED, XLS, TXT |
|sw feature=User-friendly, Scientifically relevant, Reliable, Scalable | |sw feature=User-friendly, Scientifically relevant, Reliable, Scalable | ||
|licence=Commercial | |licence=Commercial | ||
| − | |os=Windows, | + | |os=Windows, Linux |
}} | }} | ||
== Description == | == Description == | ||
Revision as of 03:11, 29 January 2012
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Application data |
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| Created by | Integromics R&D |
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| Biological application domain(s) | RNA-seq, ChIP-seq, Transcriptome sequencing, miRNA, ncRNAs, sRNA, Differential Gene Expression, Alternative Splicing analysis, New gene discovery, Differential Expression, Quality Control |
| Principal bioinformatics method(s) | SAMtools, Cufflinks, IGV, MACS, Tibco Spotfire |
| Technology | Illumina, ABI SOLiD, 454, Ion Torrent, Helicos, PacBio, any |
| Created at | Integromics |
| Maintained? | Yes |
| Input format(s) | SAM, BAM, BED, GTF, GFF, TXT |
| Output format(s) | JPG, PPT, PDF, BED, XLS, TXT |
| Software features | User-friendly, Scientifically relevant, Reliable, Scalable |
| Licence | Commercial |
| Operating system(s) | Windows, Linux |
Summary: Simple analysis of Next Generation Sequencing data.
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Description
Simple analysis. Ultimate Results.
SeqSolve™ from Integromics® is an advanced and user-friendly software solution for the tertiary analysis of Next Generation Sequencing data.
By integrating state-of-the-art bioinformatics methods into one-click analysis workflows, SeqSolve provides scientists with a unique combination of cutting edge algorithms and intuitive user experience. Its Click And Go® technology enables the automatic processing of the data and includes a Smart Quality Control system, which makes it both simple to use for non-experts and reliable in terms of biological results. SeqSolve results are therefore consistent, biologically relevant and reliable.
Starting from mapped reads as an input, SeqSolve performs a large portfolio of RNA-seq or ChIP-seq analyzes on any annotated genome, independently of the sequencing technology. SeqSolve integrates state-of-the-art tools that are widely used by the NGS community and described in the scientific literature, including SAMtools, Cufflinks, MACS and the IGV Genome Browser.
Powered by the industry leading TIBCO® Spotfire® platform, SeqSolve displays scientific visualizations with real-time interactive charts that can be exported and into PowerPoint® or PDF reports in a simple click.
Get the best of your NGS data with SeqSolve, the ultimate NGS data profiler.
Links
References
To add a reference for SeqSolve, enter the PubMed ID in the field below and click 'Add'.
Search for "SeqSolve" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
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