Difference between revisions of "Hybrid-SHREC"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Improves sequence data quality using information from multiple platforms. | |sw summary=Improves sequence data quality using information from multiple platforms. | ||
| − | |bio method= | + | |bio method=Sequence error correction, |
|bio tech=Illumina, 454, ABI SOLiD | |bio tech=Illumina, 454, ABI SOLiD | ||
| + | |input format=FASTA, | ||
| + | |language=Java | ||
}} | }} | ||
== Description == | == Description == | ||
<!-- Describe the application in the space below --> | <!-- Describe the application in the space below --> | ||
| − | + | Hybrid SHREC is an error correction algorithm for correcting reads from various DNA sequencing platforms. They provide two versions of the algorithm: one that performs the error correction in base space and is limited to normal base space reads and another that performs error correction in the color space of the SOLiD sequencing technology by Applied Biosystems. The latter version can correct a mixed set of base space and color space reads. | |
Latest revision as of 18:22, 2 December 2015
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Application data |
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| Principal bioinformatics method(s) | Sequence error correction |
|---|---|
| Technology | Illumina, 454, ABI SOLiD |
| Maintained? | Maybe |
| Input format(s) | FASTA |
| Programming language(s) | Java |
Summary: Improves sequence data quality using information from multiple platforms.
"Error: no local variable "counter" was set." is not a number.
Description
Hybrid SHREC is an error correction algorithm for correcting reads from various DNA sequencing platforms. They provide two versions of the algorithm: one that performs the error correction in base space and is limited to normal base space reads and another that performs error correction in the color space of the SOLiD sequencing technology by Applied Biosystems. The latter version can correct a mixed set of base space and color space reads.
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