Difference between revisions of "Mutascope"
Shawn yost (talk | contribs) (Created page with "{{Bioinformatics application |sw summary=Mutascope is a software suite designed to analyze data from high throughput sequencing of PCR amplicons, with an emphasis on normal-tu...") |
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|sw summary=Mutascope is a software suite designed to analyze data from high throughput sequencing of PCR amplicons, with an emphasis on normal-tumor comparison for the accurate and sensitive identification of low prevalence mutations. | |sw summary=Mutascope is a software suite designed to analyze data from high throughput sequencing of PCR amplicons, with an emphasis on normal-tumor comparison for the accurate and sensitive identification of low prevalence mutations. | ||
|bio domain=Cancer biology, | |bio domain=Cancer biology, | ||
| − | |bio method=Somatic variant calling, Analysis | + | |bio method=Somatic variant calling, Analysis pipeline |
|bio tech=Illumina, ABI SOLiD, MiSeq | |bio tech=Illumina, ABI SOLiD, MiSeq | ||
|created by=Shawn Yost, Olivier Harismendy | |created by=Shawn Yost, Olivier Harismendy | ||
Revision as of 17:02, 2 December 2015
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Application data |
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| Created by | Shawn Yost, Olivier Harismendy |
|---|---|
| Biological application domain(s) | Cancer biology |
| Principal bioinformatics method(s) | Somatic variant calling, Analysis pipeline |
| Technology | Illumina, ABI SOLiD, MiSeq |
| Created at | University of California San Diego |
| Maintained? | Yes |
| Input format(s) | FASTQ, SAM/BAM |
| Output format(s) | .bam, .vcf, other |
| Programming language(s) | Perl |
| Operating system(s) | UNIX |
Summary: Mutascope is a software suite designed to analyze data from high throughput sequencing of PCR amplicons, with an emphasis on normal-tumor comparison for the accurate and sensitive identification of low prevalence mutations.
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