Difference between revisions of "DNAA"
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|sw summary=DNAA (DNA Analysis) software for analysis of Next-Generation Sequencing data. | |sw summary=DNAA (DNA Analysis) software for analysis of Next-Generation Sequencing data. | ||
|bio domain=Structural variation, SNP discovery, DNA methylation, | |bio domain=Structural variation, SNP discovery, DNA methylation, | ||
| − | |bio method=Statistics, Sequencing | + | |bio method=Statistics, Sequencing quality control, Simulation, |
|bio tech=ABI SOLiD, Illumina, 454, | |bio tech=ABI SOLiD, Illumina, 454, | ||
|created by=Homer N | |created by=Homer N | ||
Revision as of 05:57, 25 August 2015
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Application data |
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| Created by | Homer N |
|---|---|
| Biological application domain(s) | Structural variation, SNP discovery, DNA methylation |
| Principal bioinformatics method(s) | Statistics, Sequencing quality control, Simulation |
| Technology | ABI SOLiD, Illumina, 454 |
| Maintained? | Maybe |
| Input format(s) | SAM, BAM |
| Licence | GPL |
Summary: DNAA (DNA Analysis) software for analysis of Next-Generation Sequencing data.
"Error: no local variable "counter" was set." is not a number.
DNAA complements BFAST.
It has a number of utilities, including:
- Calculate various statistics from alignment files in the SAM format (see SAMtools).
- Calculate distribution of paired end distances (dbampairedenddist)
- Assist BFAST with bisulfite methylation analysis (dmethyl/dmethylbaf))
- Detecting structural variants (dstructure, dtranslocations)
- Filter BAM files (dbamfilter, dbammetric)
- Estimate error distributions (dbamerrordist)
- Create whole-genome simulated sequence data (wgsim)
- Analyze various possible encoding schemes for ABI SOLiD data.
- Other utilities in development.
Links
References
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