Difference between revisions of "Reptile"
m (Text replace - "Sequencing Quality Control" to "Sequencing quality control") |
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|sw summary=A new algorithm for short read error correction that harvests information from k-spectrum and read decomposition | |sw summary=A new algorithm for short read error correction that harvests information from k-spectrum and read decomposition | ||
|bio domain=Genomics | |bio domain=Genomics | ||
| − | |bio method=Sequencing | + | |bio method=Sequencing quality control |
|bio tech=Illumina | |bio tech=Illumina | ||
|created by=Yang X, Dorman K, Aluru S | |created by=Yang X, Dorman K, Aluru S | ||
Latest revision as of 06:30, 25 August 2015
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Application data |
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| Created by | Yang X, Dorman K, Aluru S |
|---|---|
| Biological application domain(s) | Genomics |
| Principal bioinformatics method(s) | Sequencing quality control |
| Technology | Illumina |
| Created at | Iowa State University |
| Maintained? | Yes |
| Programming language(s) | C++ |
| Licence | GPL Boost |
Summary: A new algorithm for short read error correction that harvests information from k-spectrum and read decomposition
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Description
Reptile is a software developed in C++ for correcting sequencing errors in short reads from next-gen sequencing platforms. It has several favorable properties: 1) Memory Efficient, 2) High Speed, 3) Can handle reads containing non-acgt characters and reads with non-equal length, 4) Makes simple use of quality score information.
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