Difference between revisions of "TEQC"
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|sw summary=Quality assessment of target enrichment experiments. | |sw summary=Quality assessment of target enrichment experiments. | ||
|bio domain=Targeted resequencing, | |bio domain=Targeted resequencing, | ||
| − | |bio method=Sequencing | + | |bio method=Sequencing quality control, |
|language=R | |language=R | ||
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Revision as of 06:42, 25 August 2015
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Application data |
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| Biological application domain(s) | Targeted resequencing |
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| Principal bioinformatics method(s) | Sequencing quality control |
| Maintained? | Maybe |
| Programming language(s) | R |
Summary: Quality assessment of target enrichment experiments.
"Error: no local variable "counter" was set." is not a number.
Description
Quality measures comprise specificity and sensitivity of the capture, enrichment, per-target read coverage and its relation to hybridization probe characteristics, coverage uniformity and reproducibility, and read duplicate analysis. Several diagnostic plots allow visual inspection of the data quality.
Links
References
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