Difference between revisions of "NovelSeq"
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|sw summary=A computational framework to discover the content and location of long novel sequence insertions using paired-end sequencing data | |sw summary=A computational framework to discover the content and location of long novel sequence insertions using paired-end sequencing data | ||
|bio domain=Structural variation, InDel discovery | |bio domain=Structural variation, InDel discovery | ||
| − | |bio method=Mapping, Sequence assembly, Variant | + | |bio method=Mapping, Sequence assembly, Variant calling, |
|bio tech=Illumina | |bio tech=Illumina | ||
|created by=Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan | |created by=Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan | ||
Revision as of 10:24, 25 August 2015
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Application data |
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| Created by | Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan |
|---|---|
| Biological application domain(s) | Structural variation, InDel discovery |
| Principal bioinformatics method(s) | Mapping, Sequence assembly, Variant calling |
| Technology | Illumina |
| Created at | Simon Fraser University
University of Washington |
| Maintained? | Yes |
| Input format(s) | DIVET, SAM |
| Output format(s) | FASTA |
| Programming language(s) | C |
| Licence | BSD |
| Operating system(s) | UNIX |
Summary: A computational framework to discover the content and location of long novel sequence insertions using paired-end sequencing data
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Description
A computational framework to discover the content and location of long novel sequence insertions using paired-end sequencing data generated by the next-generation sequencing platforms. Our framework can be built as part of a general sequence analysis pipeline to discover multiple types of genetic variation (SNPs, structural variation, etc.), thus it requires significantly less computational resources than de novo sequence assembly.
Links
- NovelSeq Homepage [ edit link ]
- NovelSeq Related [ edit link ]
- NovelSeq Related [ edit link ]
- NovelSeq Related [ edit link ]
References
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