Difference between revisions of "VariationHunter"
m (Text replace - "Structural variants" to "Structural variation") |
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|sw summary=Detection of structural rearrangements | |sw summary=Detection of structural rearrangements | ||
|bio domain=Structural variation, | |bio domain=Structural variation, | ||
− | |bio method= | + | |bio method=Read mapping, Variant calling, |
|bio tech=Illumina | |bio tech=Illumina | ||
|created by=Fereydoun Hormozdiari, Can Alkan | |created by=Fereydoun Hormozdiari, Can Alkan |
Latest revision as of 10:36, 25 August 2015
Application data |
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Created by | Fereydoun Hormozdiari, Can Alkan |
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Biological application domain(s) | Structural variation |
Principal bioinformatics method(s) | Read mapping, Variant calling |
Technology | Illumina |
Created at | Simon Fraser University
University of Washington |
Maintained? | Yes |
Input format(s) | DIVET |
Programming language(s) | C |
Operating system(s) | UNIX |
Summary: Detection of structural rearrangements
"Error: no local variable "counter" was set." is not a number.
Description
VariationHunter is a combinatorial algorithms for SV detection using the paired-end, NGS methods. Our algorithm evaluates all potential mapping locations of each paired-end read and decides on the final mapping and the SVs they imply interdependently. The main criteria used for predicting SVs is based on Maximum Parsimony principle.
Links
- VariationHunter Source code [ edit link ]
- VariationHunter Related [ edit link ]
- VariationHunter Related [ edit link ]
- VariationHunter Related [ edit link ]
References
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