Difference between revisions of "PeakRanger"
m (Text replace - "ChIP-Seq" to "ChIP-seq") |
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=A multi-purpose, ultrafast ChIP Seq peak caller | |sw summary=A multi-purpose, ultrafast ChIP Seq peak caller | ||
| − | |bio domain=ChIP- | + | |bio domain=ChIP-seq, |
|bio method=Peak calling | |bio method=Peak calling | ||
|created by=Xin Feng | |created by=Xin Feng | ||
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== Description == | == Description == | ||
<!-- Describe the application in the space below --> | <!-- Describe the application in the space below --> | ||
| − | PeakRanger detects enriched regions from ChIP- | + | PeakRanger detects enriched regions from ChIP-seq experiments and also detect summits within these regions. The software is faster than most existing peak callers while consuming less memories. |
Latest revision as of 10:30, 11 January 2016
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Application data |
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| Created by | Xin Feng |
|---|---|
| Biological application domain(s) | ChIP-seq |
| Principal bioinformatics method(s) | Peak calling |
| Maintained? | Yes |
| Input format(s) | SAM/BAM, Bowtie, BED |
| Output format(s) | BED |
| Programming language(s) | C++ |
| Licence | Artistic License |
| Operating system(s) | Linux, Mac OS X |
Summary: A multi-purpose, ultrafast ChIP Seq peak caller
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Description
PeakRanger detects enriched regions from ChIP-seq experiments and also detect summits within these regions. The software is faster than most existing peak callers while consuming less memories.
Links
References
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