Difference between revisions of "GRIDSS"
m |
|||
Line 6: | Line 6: | ||
|bio tech=Illumina, | |bio tech=Illumina, | ||
|interface=Command line, | |interface=Command line, | ||
− | |resource type= | + | |resource type=Command-line tool, |
|created by=Daniel L Cameron | |created by=Daniel L Cameron | ||
|created at=WEHI | |created at=WEHI |
Latest revision as of 13:32, 1 November 2016
Application data |
|
Created by | Daniel L Cameron |
---|---|
Biological application domain(s) | Genomics, Structural variation, Genetic variation analysis |
Principal bioinformatics method(s) | Sequence assembly, whole genome breakend assembly, assembly, Split-read mapping, Read alignment |
Technology | Illumina |
Created at | WEHI |
Maintained? | Yes |
Input format(s) | SAM, BAM, CRAM |
Output format(s) | VCF, BEDPE, BAM |
Software version | 0.11.4 |
Programming language(s) | Java |
Interface type(s) | Command line |
Resource type(s) | Command-line tool |
Licence | GPLv3 |
Operating system(s) | Cross-Platform |
Summary: GRIDSS is a structural variant caller which combines whole genome breakend assembly with read pair and split read support using a probabilistic model.
"Error: no local variable "counter" was set." is not a number.
Description
Links
References
none specified
To add a reference for GRIDSS, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "GRIDSS" in the SEQanswers forum / BioStar or:
Web Search | Wiki Sites | Scientific |
---|---|---|