GRIDSS

Application data
Created by	Daniel L Cameron
Biological application domain(s)	Genomics, Structural variation, Genetic variation analysis
Principal bioinformatics method(s)	Sequence assembly, whole genome breakend assembly, assembly, Split-read mapping, Read alignment
Technology	Illumina
Created at	WEHI
Maintained?	Yes
Input format(s)	SAM, BAM, CRAM
Output format(s)	VCF, BEDPE, BAM
Software version	0.11.4
Programming language(s)	Java
Interface type(s)	Command line
Resource type(s)	Command-line tool
Licence	GPLv3
Operating system(s)	Cross-Platform

Summary: GRIDSS is a structural variant caller which combines whole genome breakend assembly with read pair and split read support using a probabilistic model.

"Error: no local variable "counter" was set." is not a number.

Links

• GRIDSS Source code [ edit link ]
• GRIDSS Binaries [ edit link ]

• Add a Link

References

none specified

To add a reference for GRIDSS, enter the PubMed ID in the field below and click 'Add'.

 

[ edit box ]

Search for "GRIDSS" in the SEQanswers forum / BioStar or:

Web Search	Wiki Sites	Scientific
Google. Bioinformatics journals Clusty	WikiPedia MetaBase BioPedia OpenWetWare bifx wiki	PubMed Europe PMC ScientificCommons.org