Difference between revisions of "MUMmer"
(link to pubmed for related software) |
(Hrm) |
||
Line 1: | Line 1: | ||
{{Bioinformatics application | {{Bioinformatics application | ||
− | |sw summary=MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. | + | |sw summary=MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. |
+ | |bio domain=Alignment | ||
+ | |bio method=Alignments | ||
+ | |created by=Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL | ||
+ | |created at=The Institute for Genomic Research, Maryland | ||
+ | |input format=FASTA, | ||
+ | |os=POSIX | ||
}} | }} | ||
Link: http://mummer.sourceforge.net/ Category: Alignment | Link: http://mummer.sourceforge.net/ Category: Alignment | ||
[PMID http://www.ncbi.nlm.nih.gov/pubmed/19389736] claims to be interface equivalent, and more memory efficient. | [PMID http://www.ncbi.nlm.nih.gov/pubmed/19389736] claims to be interface equivalent, and more memory efficient. | ||
+ | |||
+ | MUMmer is released as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools. |
Revision as of 16:23, 5 January 2010
Application data |
|
Created by | Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL |
---|---|
Biological application domain(s) | Alignment |
Principal bioinformatics method(s) | Alignments |
Created at | The Institute for Genomic Research, Maryland |
Maintained? | Maybe |
Input format(s) | FASTA |
Operating system(s) | POSIX |
Summary: MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence.
"Error: no local variable "counter" was set." is not a number.
Link: http://mummer.sourceforge.net/ Category: Alignment
[PMID http://www.ncbi.nlm.nih.gov/pubmed/19389736] claims to be interface equivalent, and more memory efficient.
MUMmer is released as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.