Difference between revisions of "FastQC"
(Created page with '{{Bioinformatics application |sw summary=FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelin…') |
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. | |sw summary=FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. | ||
| + | |bio method=Sequencing Quality Control, | ||
| + | |bio tech=Solexa/Illumina, ABI SOLiD, | ||
| + | |created by=Andrews, SR | ||
| + | |created at=The Babraham Institute, | ||
| + | |maintained=Yes | ||
|input format=FASTQ | |input format=FASTQ | ||
| − | |output format=HTML, | + | |output format=HTML, |
| − | |language=Java, | + | |language=Java, |
|licence=GPLv3 | |licence=GPLv3 | ||
| + | |os=UNIX and Windows, | ||
}} | }} | ||
| + | FastQC creates a comprehensive report looking at the composition and quality of a high throughput sequence library. It can operate either as an interactive stand-alone application suitable for use by end users receiving sequence data, or in a non-interactive mode which would be suitable for integrating into a sequencing pipeline. | ||
Revision as of 09:44, 30 April 2010
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Application data |
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| Created by | Andrews, SR |
|---|---|
| Principal bioinformatics method(s) | Sequencing Quality Control |
| Technology | Solexa/Illumina, ABI SOLiD |
| Created at | The Babraham Institute |
| Maintained? | Yes |
| Input format(s) | FASTQ |
| Output format(s) | HTML |
| Programming language(s) | Java |
| Licence | GPLv3 |
| Operating system(s) | UNIX and Windows |
Summary: FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines.
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FastQC creates a comprehensive report looking at the composition and quality of a high throughput sequence library. It can operate either as an interactive stand-alone application suitable for use by end users receiving sequence data, or in a non-interactive mode which would be suitable for integrating into a sequencing pipeline.
