Difference between revisions of "Phred Phrap Consed Cross match"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=The phred software reads DNA sequencing trace files, calls bases, and assigns a quality value to each called base. Phrap is a program for assembling shotgun DNA sequence data. Cross_match is a general purpose utility for comparing any two DNA sequence sets using a 'banded' version of swat. Consed/Autofinish is a tool for viewing, editing, and finishing sequence assemblies created with phrap. | |sw summary=The phred software reads DNA sequencing trace files, calls bases, and assigns a quality value to each called base. Phrap is a program for assembling shotgun DNA sequence data. Cross_match is a general purpose utility for comparing any two DNA sequence sets using a 'banded' version of swat. Consed/Autofinish is a tool for viewing, editing, and finishing sequence assemblies created with phrap. | ||
− | |bio method= | + | |bio method=Alignments, Assembly, Basecaller, Smith-Waterman, |
|bio tech=Sanger, | |bio tech=Sanger, | ||
|maintained=Yes | |maintained=Yes | ||
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}} | }} | ||
See [[Phred]], [[Phrap]], [[Cross match]] and [[Consed]]. | See [[Phred]], [[Phrap]], [[Cross match]] and [[Consed]]. | ||
+ | {{Links}} | ||
+ | {{References}} | ||
+ | {{Link box}} |
Revision as of 20:10, 25 May 2010
Application data |
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Principal bioinformatics method(s) | Alignments, Assembly, Basecaller, Smith-Waterman |
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Technology | Sanger |
Maintained? | Yes |
Input format(s) | AB1 |
Output format(s) | FASTA |
Summary: The phred software reads DNA sequencing trace files, calls bases, and assigns a quality value to each called base. Phrap is a program for assembling shotgun DNA sequence data. Cross_match is a general purpose utility for comparing any two DNA sequence sets using a 'banded' version of swat. Consed/Autofinish is a tool for viewing, editing, and finishing sequence assemblies created with phrap.
"Error: no local variable "counter" was set." is not a number.
See Phred, Phrap, Cross match and Consed.
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