Difference between revisions of "SHORTY"
| Line 3: | Line 3: | ||
|bio domain=De-novo assembly, | |bio domain=De-novo assembly, | ||
|bio method=Assembly, | |bio method=Assembly, | ||
| − | |bio tech=SOLiD, | + | |bio tech=ABI SOLiD, |
|created by=Steven Skiena | |created by=Steven Skiena | ||
| − | |created at=Stony Brook University | + | |created at=Stony Brook University |
|maintained=No | |maintained=No | ||
| − | |language=C++, Perl, | + | |language=C++, Perl, |
}} | }} | ||
===Description=== | ===Description=== | ||
Revision as of 02:48, 5 January 2012
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Application data |
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| Created by | Steven Skiena |
|---|---|
| Biological application domain(s) | De-novo assembly |
| Principal bioinformatics method(s) | Assembly |
| Technology | ABI SOLiD |
| Created at | Stony Brook University |
| Maintained? | No |
| Programming language(s) | C++, Perl |
Summary: SHORTY is targetted for de novo assembly of microreads with mate pair information and sequencing errors. SHORTY has some novel approach and features in addressing the short read assembly problem..
"Error: no local variable "counter" was set." is not a number.
Description
SHORTY is going through constant development and improvement. Though it is meant to work for any platform of short read sequencing, currently we are more focused on ABI's SOLiD type data. This release is more ABI friendly.
Comparison with Velvet can be downloaded from here.
Links
References
To add a reference for SHORTY, enter the PubMed ID in the field below and click 'Add'.
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